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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10028294m | ||||||||
Common Name | CICLE_v10028294mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C2H2 | ||||||||
Protein Properties | Length: 493aa MW: 54426 Da PI: 9.8578 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.1 | 0.00014 | 66 | 86 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H Ciclev10028294m 66 CEICNKGFQRDQNLQLHRRGH 86 *******************88 PP | |||||||
2 | zf-C2H2 | 11.9 | 0.00069 | 140 | 162 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + Ciclev10028294m 140 WKCEKCSKKYAVQSDWKAHSKIC 162 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.78E-7 | 63 | 86 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.3E-5 | 63 | 86 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.11 | 64 | 86 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.824 | 64 | 86 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 66 | 86 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 110 | 105 | 135 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.5E-4 | 128 | 161 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.78E-7 | 135 | 160 | No hit | No description |
SMART | SM00355 | 140 | 140 | 160 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 493 aa Download sequence Send to blast |
MMSQDHGLSV PSTLKGFVQE PNSNPNPNPS SNQLKRKRNL PGTPDPDAEV IALSPKSLMA 60 TNRFLCEICN KGFQRDQNLQ LHRRGHNLPW KLKQRTNKEV RKKVYICPEK SCVHHDPSRA 120 LGDLTGIKKH FSRKHGEKKW KCEKCSKKYA VQSDWKAHSK ICGTREYRCD CGTLFSRKDS 180 FITHRAFCDA LAEESARFTT ISSTNPQAAA AIPQFSSVFR QQQQSAPGSE LAGNNVIADG 240 QKPRLPLWLD QANNSNAMLT PIGSSSTGLP ELSQMVSPMN MFGSLSQMQW FSGGANLSMS 300 SSSSLPRGIP KEEEENKAYN LSESMTSLYP SNQSGQQQQQ QQQQQQQGLA HMSATALLQK 360 AAQMGSTRSN ANNSTGFGLM STSFNSFNQT DKNELHKFFK QPNQQVADND QNLNELIMNS 420 FSCPTNMGAV AGSSNASLLM ANAKNASNEA ERRLTRDFLG VGVESSRPLS QQELAKFMNL 480 SSQYGGNPHH RS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 90 | 102 | KLKQRTNKEVRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.22455 | 0.0 | abscission zone |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006424606.1 | 0.0 | hypothetical protein CICLE_v10028294mg | ||||
Refseq | XP_006424607.1 | 0.0 | hypothetical protein CICLE_v10028294mg | ||||
Refseq | XP_006488129.1 | 0.0 | PREDICTED: protein indeterminate-domain 9 | ||||
Swissprot | Q700D2 | 1e-123 | IDD10_ARATH; Zinc finger protein JACKDAW | ||||
TrEMBL | A0A067GD07 | 0.0 | A0A067GD07_CITSI; Uncharacterized protein | ||||
TrEMBL | V4SLB1 | 0.0 | V4SLB1_9R | ||||
STRING | VIT_06s0004g03070.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45260.1 | 1e-109 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10028294m |
Entrez Gene | 18034191 |