PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Home  BLAST  Prediction  RegMap  ATRM  Download  Help  About  Links
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10028294m
Common NameCICLE_v10028294mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 493aa    MW: 54426 Da    PI: 9.8578
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10028294mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000146686323
                     ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                     C++C+k F r  nL+ H r H
  Ciclev10028294m 66 CEICNKGFQRDQNLQLHRRGH 86
                     *******************88 PP
2zf-C2H211.90.00069140162123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC++C+k +  +s+ k H + +
  Ciclev10028294m 140 WKCEKCSKKYAVQSDWKAHSKIC 162
                      58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.78E-76386No hitNo description
Gene3DG3DSA:3.30.160.602.3E-56386IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.116486IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8246486IPR007087Zinc finger, C2H2
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
SMARTSM00355110105135IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.5E-4128161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.78E-7135160No hitNo description
SMARTSM00355140140160IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MMSQDHGLSV PSTLKGFVQE PNSNPNPNPS SNQLKRKRNL PGTPDPDAEV IALSPKSLMA  60
TNRFLCEICN KGFQRDQNLQ LHRRGHNLPW KLKQRTNKEV RKKVYICPEK SCVHHDPSRA  120
LGDLTGIKKH FSRKHGEKKW KCEKCSKKYA VQSDWKAHSK ICGTREYRCD CGTLFSRKDS  180
FITHRAFCDA LAEESARFTT ISSTNPQAAA AIPQFSSVFR QQQQSAPGSE LAGNNVIADG  240
QKPRLPLWLD QANNSNAMLT PIGSSSTGLP ELSQMVSPMN MFGSLSQMQW FSGGANLSMS  300
SSSSLPRGIP KEEEENKAYN LSESMTSLYP SNQSGQQQQQ QQQQQQQGLA HMSATALLQK  360
AAQMGSTRSN ANNSTGFGLM STSFNSFNQT DKNELHKFFK QPNQQVADND QNLNELIMNS  420
FSCPTNMGAV AGSSNASLLM ANAKNASNEA ERRLTRDFLG VGVESSRPLS QQELAKFMNL  480
SSQYGGNPHH RS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
190102KLKQRTNKEVRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.224550.0abscission zone
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006424606.10.0hypothetical protein CICLE_v10028294mg
RefseqXP_006424607.10.0hypothetical protein CICLE_v10028294mg
RefseqXP_006488129.10.0PREDICTED: protein indeterminate-domain 9
SwissprotQ700D21e-123IDD10_ARATH; Zinc finger protein JACKDAW
TrEMBLA0A067GD070.0A0A067GD07_CITSI; Uncharacterized protein
TrEMBLV4SLB10.0V4SLB1_9R
STRINGVIT_06s0004g03070.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-109C2H2-like zinc finger protein